\select@language {french}
\contentsline {section}{\numberline {1}Introduction}{4}{section.1}
\contentsline {section}{\numberline {2}Pr\IeC {\'e}sentation du projet}{5}{section.2}
\contentsline {subsection}{\numberline {2.1}Contexte biologique}{5}{subsection.2.1}
\contentsline {subsection}{\numberline {2.2}Base de donn\IeC {\'e}es de la taxonomie}{6}{subsection.2.2}
\contentsline {subsection}{\numberline {2.3}Probl\IeC {\`e}matique}{7}{subsection.2.3}
\contentsline {section}{\numberline {3}Travail r\IeC {\'e}alis\IeC {\'e}}{8}{section.3}
\contentsline {subsection}{\numberline {3.1}Construction de la base de donn\IeC {\'e}e}{8}{subsection.3.1}
\contentsline {subsubsection}{\numberline {3.1.1}R\IeC {\'e}cup\IeC {\'e}ration des donn\IeC {\'e}es du NCBI}{8}{subsubsection.3.1.1}
\contentsline {subsubsection}{\numberline {3.1.2}Construction de la base de donn\IeC {\'e}e locale}{9}{subsubsection.3.1.2}
\contentsline {paragraph}{Pr\IeC {\'e}sentation de la structure arborescente locale}{9}{section*.10}
\contentsline {paragraph}{G\IeC {\'e}n\IeC {\'e}ration des dossiers}{10}{section*.13}
\contentsline {subsubsection}{\numberline {3.1.3}Gestion des donn\IeC {\'e}es}{13}{subsubsection.3.1.3}
\contentsline {paragraph}{G\IeC {\'e}n\IeC {\'e}ration des donn\IeC {\'e}es genbank}{13}{section*.17}
\contentsline {paragraph}{Extraction des donn\IeC {\'e}es}{15}{section*.20}
\contentsline {subsection}{\numberline {3.2}Apprentissage et Classification}{17}{subsection.3.2}
\contentsline {subsubsection}{\numberline {3.2.1}Comptage des K-mots}{17}{subsubsection.3.2.1}
\contentsline {paragraph}{Principe du comptage}{17}{section*.24}
\contentsline {paragraph}{Algorithme de comptage}{18}{section*.28}
\contentsline {subsubsection}{\numberline {3.2.2}Apprentissage statistique}{19}{subsubsection.3.2.2}
\contentsline {paragraph}{Pr\IeC {\'e}sentation de WEKA}{19}{section*.30}
\contentsline {paragraph}{Format Weka (format d'entr\IeC {\'e}e)}{20}{section*.31}
\contentsline {paragraph}{Int\IeC {\'e}r\IeC {\^e}t de son utilisation dans le projet}{21}{section*.33}
\contentsline {subsection}{\numberline {3.3}Applications}{23}{subsection.3.3}
\contentsline {subsubsection}{\numberline {3.3.1}Validation crois\IeC {\'e}e}{23}{subsubsection.3.3.1}
\contentsline {subsubsection}{\numberline {3.3.2}R\IeC {\'e}sulats}{23}{subsubsection.3.3.2}
\contentsline {paragraph}{Hexapoda}{24}{section*.35}
\contentsline {paragraph}{Vertebratas}{25}{section*.40}
\contentsline {section}{\numberline {4}Conclusion}{27}{section.4}
\contentsline {section}{\numberline {A}Exemple d'une entr\IeC {\'e}e genbank}{28}{appendix.A}
\contentsline {section}{\numberline {B}Cas complexes}{30}{appendix.B}
\contentsline {section}{\numberline {C}Arbre newick \IeC {\`a} partir des eucaryotes}{31}{appendix.C}
\contentsline {section}{\numberline {}Bibliographie}{33}{appendix.C}
